/EXTERNAL BLUEPRINT/K006306_K006316_21_lane_gembs/S00C1H.Bisulfite-Seq.DNA_Methylation.EGAX00001208460.cnag-blueprint-17_C3PFRACXX

BACK

SAMPLE K006306_K006316_21_lane_gembs LANE S00C1H.Bisulfite-Seq.DNA_Methylation.EGAX00001208460.cnag-blueprint-17_C3PFRACXX

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	64461482	100.00 %	32230741	100.00 %	32230741	100.00 %
General Reads	60429689	93.75 %	30162383	93.58 %	30267306	93.91 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	1041315	1.62 %	522049	1.62 %	519266	1.61 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	2990478	4.64 %	1546309	4.80 %	1444169	4.48 %
Bisulfite_reads C2T	32651837	50.65 %	16304695	50.59 %	16347142	50.72 %
Bisulfite_reads G2A	28819167	44.71 %	14379737	44.61 %	14439430	44.80 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	22090497
Average Unique	68.54 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	2306554549	35.08 %	955705865	29.07 %	1350848684	41.09 %
Base Counts Overall C	966211094	14.70 %	74544699	2.27 %	891666395	27.12 %
Base Counts Overall G	985211955	14.98 %	908965276	27.65 %	76246679	2.32 %
Base Counts Overall T	2252253516	34.25 %	1315947862	40.03 %	936305654	28.48 %
Base Counts Overall N	64840050	0.99 %	32371880	0.98 %	32468170	0.99 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.998676198279275
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	28705454

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
101	32230741
101	32230741

Insert Size Plot

Insert Size Histogram