/EXTERNAL BLUEPRINT/K006306_K006316_21_lane_gembs/S00C1H.Bisulfite-Seq.DNA_Methylation.EGAX00001208470_20

BACK

SAMPLE K006306_K006316_21_lane_gembs LANE S00C1H.Bisulfite-Seq.DNA_Methylation.EGAX00001208470_20

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1144116926 100.00 % 572058463 100.00 % 572058463 100.00 %
General Reads 1097603204 95.93 % 550160569 96.17 % 547442635 95.70 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 21770732 1.90 % 10912866 1.91 % 10857866 1.90 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 24742990 2.16 % 10985028 1.92 % 13757962 2.40 %
Bisulfite_reads C2T 592650922 51.80 % 297137603 51.94 % 295513319 51.66 %
Bisulfite_reads G2A 526723014 46.04 % 263935832 46.14 % 262787182 45.94 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 421726742
Average Unique 73.72 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 40227026589 34.49 % 16514206764 28.31 % 23712819825 40.66 %
Base Counts Overall C 17591922255 15.08 % 1001821142 1.72 % 16590101113 28.44 %
Base Counts Overall G 17732345504 15.20 % 16695065103 28.62 % 1037280401 1.78 %
Base Counts Overall T 39941720068 34.24 % 23535478059 40.35 % 16406242009 28.13 %
Base Counts Overall N 1156940354 0.99 % 578406317 0.99 % 578534037 0.99 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989351712299158
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 526726532



Mapping Quality

Mapping Quality Histogram
S00C1H.Bisulfite-Seq.DNA_Methylation.EGAX00001208470_20.mapq.png



Read Length

Read Length Reads
101 547072622
100 24985841
101 547072622
100 24985841



Insert Size Plot

Insert Size Histogram
S00C1H.Bisulfite-Seq.DNA_Methylation.EGAX00001208470_20.isize.png