/EXTERNAL BLUEPRINT/mapping_coverage/K006306_K006316_21_lane_gembs
BACK
SAMPLE K006306_K006316_21_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1127833749 |
100% |
97543374647 |
100% |
| Mapped |
1115434732 |
98.90 % |
96291587189 |
98.72 % |
| Passed |
815696959 |
72.32 % |
66029363488 |
67.69 % |
| NotPassed |
299737773 |
26.58 % |
30262223701 |
31.02 % |
| |
|
|
|
|
| LowMAPQ |
244657442 |
21.69 % |
24700343256 |
25.32 % |
| MateUnmapped |
12399017 |
1.10 % |
1251787458 |
1.28 % |
| Duplicate |
30426165 |
2.70 % |
3072815041 |
3.15 % |
| BadOrientation |
166 |
0.00 % |
16766 |
0.00 % |
| LargeInsertSize |
52610 |
0.00 % |
5311546 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
24601390 |
2.18 % |
2483737092 |
2.55 % |
| Unmapped |
12399017 |
1.10 % |
1251787458 |
1.28 % |
Base Level Counts
| Bases |
# |
% |
| Total |
82331862464 |
100% |
| Passed |
61986012810 |
75.29 % |
| Trimmed |
3434477218 |
4.17 % |
| Clipped |
94369837 |
0.11 % |
| Overlapping |
16208129139 |
19.69 % |
| LowQuality |
608873460 |
0.74 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |