/EXTERNAL BLUEPRINT/methylation/K006306_K006316_21_lane_gembs
BACK
SAMPLE K006306_K006316_21_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26015722 |
17812123 |
68.47 % |
| NonRefCpG |
374384 |
126141 |
33.69 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5827296 |
13.41 % |
3936293 |
11.75 % |
120674 |
20.85 % |
25304 |
9.25 % |
| Intermediate (0.3-0.7) |
7169599 |
16.50 % |
4107150 |
12.26 % |
144423 |
24.95 % |
45242 |
16.54 % |
| Methylated (0.7-1) |
30452109 |
70.09 % |
25463337 |
75.99 % |
313774 |
54.20 % |
203063 |
74.22 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.850 |
|
0.870 |
|
0.740 |
|
0.860 |
|