/EXTERNAL BLUEPRINT/K006303_17_lane_gembs/S006VI.Bisulfite-Seq.DNA_Methylation.EGAX00001208457_17

BACK

SAMPLE K006303_17_lane_gembs LANE S006VI.Bisulfite-Seq.DNA_Methylation.EGAX00001208457_17

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1392952460 100.00 % 696476230 100.00 % 696476230 100.00 %
General Reads 1245172508 89.39 % 615680141 88.40 % 629492367 90.38 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 10130082 0.73 % 5077386 0.73 % 5052696 0.73 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 137649870 9.88 % 75718703 10.87 % 61931167 8.89 %
Bisulfite_reads C2T 672378768 48.27 % 332997721 47.81 % 339381047 48.73 %
Bisulfite_reads G2A 582923822 41.85 % 287759806 41.32 % 295164016 42.38 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 391799732
Average Unique 56.25 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 50128089081 35.31 % 21137722877 29.78 % 28990366204 40.85 %
Base Counts Overall C 21086455069 14.86 % 2547365885 3.59 % 18539089184 26.12 %
Base Counts Overall G 22106532055 15.57 % 19053466312 26.85 % 3053065743 4.30 %
Base Counts Overall T 47214934847 33.26 % 27532953058 38.79 % 19681981789 27.73 %
Base Counts Overall N 1410528490 0.99 % 701761639 0.99 % 708766851 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9987420899453868
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 525238179



Mapping Quality

Mapping Quality Histogram
S006VI.Bisulfite-Seq.DNA_Methylation.EGAX00001208457_17.mapq.png



Read Length

Read Length Reads
101 629170541
100 67305689
101 629170541
100 67305689



Insert Size Plot

Insert Size Histogram
S006VI.Bisulfite-Seq.DNA_Methylation.EGAX00001208457_17.isize.png