/EXTERNAL BLUEPRINT/mapping_coverage/K006303_17_lane_gembs
BACK
SAMPLE K006303_17_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1190819583 |
100% |
106065951041 |
100% |
| Mapped |
1154693265 |
96.97 % |
102420485459 |
96.56 % |
| Passed |
675771209 |
56.75 % |
54092160820 |
51.00 % |
| NotPassed |
478922056 |
40.22 % |
48328324639 |
45.56 % |
| |
|
|
|
|
| LowMAPQ |
386247774 |
32.44 % |
38973422206 |
36.74 % |
| MateUnmapped |
36126318 |
3.03 % |
3645465582 |
3.44 % |
| Duplicate |
56417368 |
4.74 % |
5696516722 |
5.37 % |
| BadOrientation |
258 |
0.00 % |
26030 |
0.00 % |
| LargeInsertSize |
207406 |
0.02 % |
20930940 |
0.02 % |
| |
|
|
|
|
| NotCorrectlyAligned |
36049250 |
3.03 % |
3637428741 |
3.43 % |
| Unmapped |
36126318 |
3.03 % |
3645465582 |
3.44 % |
Base Level Counts
| Bases |
# |
% |
| Total |
68140999660 |
100% |
| Passed |
50456357035 |
74.05 % |
| Trimmed |
2860025171 |
4.20 % |
| Clipped |
186537569 |
0.27 % |
| Overlapping |
13862301271 |
20.34 % |
| LowQuality |
775778614 |
1.14 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |