/EXTERNAL BLUEPRINT/methylation/K006303_17_lane_gembs

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SAMPLE K006303_17_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26254781 16164658 61.57 %
NonRefCpG 493164 111475 22.60 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006303_17_lane_gembs_coverage_refCpG.png ./IMG//K006303_17_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006303_17_lane_gembs_coverage_nonRefCpG.png ./IMG//K006303_17_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006303_17_lane_gembs_quality_refcpg.png ./IMG//K006303_17_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006303_17_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6527563 14.63 % 4017293 12.50 % 170188 23.08 % 29989 10.87 %
Intermediate (0.3-0.7) 9733252 21.82 % 5387854 16.76 % 213974 29.02 % 59455 21.56 %
Methylated (0.7-1) 28350164 63.55 % 22734362 70.74 % 353260 47.90 % 186381 67.57 %
Median Methylation 0.790 0.830 0.670 0.810