/EXTERNAL BLUEPRINT/K006309_K006319_21_lane_gembs/S00DVR.Bisulfite-Seq.DNA_Methylation.EGAX00001208463.cnag-blueprint-17_C3PFRACXX
BACK| Concept | Total Reads | % | Pair One Reads | % | Pair Two Reads | % |
|---|---|---|---|---|---|---|
| Sequenced Reads | 53785296 | 100.00 % | 26892648 | 100.00 % | 26892648 | 100.00 % |
| General Reads | 47269622 | 87.89 % | 23334093 | 86.77 % | 23935529 | 89.00 % |
| Reads in Control sequences | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Reads under conversion control | 960281 | 1.79 % | 480665 | 1.79 % | 479616 | 1.78 % |
| Reads over conversion control | 0 | 0.00 % | 0 | 0.00 % | 0 | 0.00 % |
| Unmapped reads | 5555393 | 10.33 % | 3077890 | 11.45 % | 2477503 | 9.21 % |
| Bisulfite_reads C2T | 26404851 | 49.09 % | 13065634 | 48.58 % | 13339217 | 49.60 % |
| Bisulfite_reads G2A | 21825052 | 40.58 % | 10749124 | 39.97 % | 11075928 | 41.19 % |
| Concept | Value |
|---|---|
| Unique Fragments | 15964535 |
| Average Unique | 59.36 % |
| Concept | Total Bases | % | Pair One Bases | % | Pair Two Bases | % |
|---|---|---|---|---|---|---|
| Base Counts Overall A | 1912406762 | 34.86 % | 828716987 | 30.21 % | 1083689775 | 39.51 % |
| Base Counts Overall C | 836544880 | 15.25 % | 92014927 | 3.35 % | 744529953 | 27.14 % |
| Base Counts Overall G | 874797904 | 15.95 % | 768802120 | 28.03 % | 105995784 | 3.86 % |
| Base Counts Overall T | 1808244929 | 32.96 % | 1026503803 | 37.42 % | 781741126 | 28.50 % |
| Base Counts Overall N | 54105717 | 0.99 % | 27012259 | 0.98 % | 27093458 | 0.99 % |
| Bisulfite Conversion Type | Conversion Rate |
|---|---|
| Conversion Rate | 0.9989945364631022 |
| Over Conversion Rate | NA |
| Concept | Total Reads |
|---|---|
| Correct Pairs | 22129715 |
| Mapping Quality Histogram |
|---|
| |
| Read Length | Reads |
|---|---|
| 101 | 26892648 |
| 101 | 26892648 |
| Insert Size Histogram |
|---|
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