/EXTERNAL BLUEPRINT/K006309_K006319_21_lane_gembs/S00DVR.Bisulfite-Seq.DNA_Methylation.EGAX00001208473_20

BACK

SAMPLE K006309_K006319_21_lane_gembs LANE S00DVR.Bisulfite-Seq.DNA_Methylation.EGAX00001208473_20

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1180642178 100.00 % 590321089 100.00 % 590321089 100.00 %
General Reads 1127171133 95.47 % 564448880 95.62 % 562722253 95.32 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 22775460 1.93 % 11406383 1.93 % 11369077 1.93 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 30695585 2.60 % 14465826 2.45 % 16229759 2.75 %
Bisulfite_reads C2T 624678893 52.91 % 312972652 53.02 % 311706241 52.80 %
Bisulfite_reads G2A 525267700 44.49 % 262882611 44.53 % 262385089 44.45 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 407079284
Average Unique 68.96 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 40971879125 34.06 % 17380367463 28.90 % 23591511662 39.22 %
Base Counts Overall C 18674000190 15.52 % 1097544213 1.82 % 17576455977 29.22 %
Base Counts Overall G 18889035789 15.70 % 17719942846 29.46 % 1169092943 1.94 %
Base Counts Overall T 40569040881 33.72 % 23353927999 38.83 % 17215112882 28.62 %
Base Counts Overall N 1193946461 0.99 % 597168702 0.99 % 596777759 0.99 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9987710170415328
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 535146864



Mapping Quality

Mapping Quality Histogram
S00DVR.Bisulfite-Seq.DNA_Methylation.EGAX00001208473_20.mapq.png



Read Length

Read Length Reads
101 526521234
100 63799855
101 526521234
100 63799855



Insert Size Plot

Insert Size Histogram
S00DVR.Bisulfite-Seq.DNA_Methylation.EGAX00001208473_20.isize.png