/EXTERNAL BLUEPRINT/mapping_coverage/K006309_K006319_21_lane_gembs
BACK
SAMPLE K006309_K006319_21_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1142928269 |
100% |
99185068246 |
100% |
| Mapped |
1128849057 |
98.77 % |
97764489855 |
98.57 % |
| Passed |
771171764 |
67.47 % |
61673715158 |
62.18 % |
| NotPassed |
357677293 |
31.29 % |
36090774697 |
36.39 % |
| |
|
|
|
|
| LowMAPQ |
297162926 |
26.00 % |
29982680884 |
30.23 % |
| MateUnmapped |
14079212 |
1.23 % |
1420578391 |
1.43 % |
| Duplicate |
31850104 |
2.79 % |
3215951169 |
3.24 % |
| BadOrientation |
158 |
0.00 % |
15944 |
0.00 % |
| LargeInsertSize |
102850 |
0.01 % |
10378104 |
0.01 % |
| |
|
|
|
|
| NotCorrectlyAligned |
28561255 |
2.50 % |
2881748596 |
2.91 % |
| Unmapped |
14079212 |
1.23 % |
1420578391 |
1.43 % |
Base Level Counts
| Bases |
# |
% |
| Total |
77779895432 |
100% |
| Passed |
57898329110 |
74.44 % |
| Trimmed |
3227678840 |
4.15 % |
| Clipped |
97178145 |
0.12 % |
| Overlapping |
16009002129 |
20.58 % |
| LowQuality |
547707208 |
0.70 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |