/EXTERNAL BLUEPRINT/methylation/K006309_K006319_21_lane_gembs
BACK
SAMPLE K006309_K006319_21_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
25851724 |
16172321 |
62.56 % |
| NonRefCpG |
381807 |
111242 |
29.14 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
5919419 |
14.00 % |
3729679 |
12.16 % |
118176 |
20.60 % |
22400 |
9.19 % |
| Intermediate (0.3-0.7) |
7711957 |
18.24 % |
4040556 |
13.18 % |
151366 |
26.39 % |
42265 |
17.34 % |
| Methylated (0.7-1) |
28649916 |
67.76 % |
22889336 |
74.66 % |
304064 |
53.01 % |
179136 |
73.48 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.830 |
|
0.860 |
|
0.720 |
|
0.850 |
|