/EXTERNAL BLUEPRINT/K006326_15_lane_gembs/S006XE.Bisulfite-Seq.DNA_Methylation.EGAX00001236260_15

BACK

SAMPLE K006326_15_lane_gembs LANE S006XE.Bisulfite-Seq.DNA_Methylation.EGAX00001236260_15

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1252529386 100.00 % 626264693 100.00 % 626264693 100.00 %
General Reads 1213284960 96.87 % 608595133 97.18 % 604689827 96.55 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 18279261 1.46 % 9157926 1.46 % 9121335 1.46 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 20965165 1.67 % 8511634 1.36 % 12453531 1.99 %
Bisulfite_reads C2T 652501015 52.09 % 327320790 52.27 % 325180225 51.92 %
Bisulfite_reads G2A 579063206 46.23 % 290432269 46.38 % 288630937 46.09 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 484230910
Average Unique 77.32 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 45132013373 35.33 % 18079561511 28.30 % 27052451862 42.35 %
Base Counts Overall C 18105837235 14.17 % 862961772 1.35 % 17242875463 26.99 %
Base Counts Overall G 18345335013 14.36 % 17500265174 27.40 % 845069839 1.32 %
Base Counts Overall T 44881227637 35.13 % 26807304734 41.97 % 18073922903 28.29 %
Base Counts Overall N 1293584114 1.01 % 628905495 0.98 % 664678619 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992462042477739
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 592852742



Mapping Quality

Mapping Quality Histogram
S006XE.Bisulfite-Seq.DNA_Methylation.EGAX00001236260_15.mapq.png



Read Length

Read Length Reads
101 626264693
101 626264693



Insert Size Plot

Insert Size Histogram
S006XE.Bisulfite-Seq.DNA_Methylation.EGAX00001236260_15.isize.png