/EXTERNAL BLUEPRINT/mapping_coverage/K006326_15_lane_gembs
BACK
SAMPLE K006326_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1199409067 |
100% |
104430213130 |
100% |
| Mapped |
1187414243 |
99.00 % |
103218735906 |
98.84 % |
| Passed |
933192264 |
77.80 % |
77542316027 |
74.25 % |
| NotPassed |
254221979 |
21.20 % |
25676419879 |
24.59 % |
| |
|
|
|
|
| LowMAPQ |
221547796 |
18.47 % |
22376327396 |
21.43 % |
| MateUnmapped |
11994824 |
1.00 % |
1211477224 |
1.16 % |
| Duplicate |
13912997 |
1.16 % |
1405212697 |
1.35 % |
| BadOrientation |
62 |
0.00 % |
6262 |
0.00 % |
| LargeInsertSize |
24308 |
0.00 % |
2455108 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
18736816 |
1.56 % |
1892418416 |
1.81 % |
| Unmapped |
11994824 |
1.00 % |
1211477224 |
1.16 % |
Base Level Counts
| Bases |
# |
% |
| Total |
94246948302 |
100% |
| Passed |
72941951182 |
77.39 % |
| Trimmed |
3926272356 |
4.17 % |
| Clipped |
107766940 |
0.11 % |
| Overlapping |
16596865335 |
17.61 % |
| LowQuality |
674092489 |
0.72 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |