/EXTERNAL BLUEPRINT/methylation/K006326_15_lane_gembs

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SAMPLE K006326_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26516234 19615165 73.97 %
NonRefCpG 333601 144043 43.18 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006326_15_lane_gembs_coverage_refCpG.png ./IMG//K006326_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006326_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006326_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006326_15_lane_gembs_quality_refcpg.png ./IMG//K006326_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006326_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6250837 13.59 % 4492461 11.95 % 104824 19.15 % 27731 8.92 %
Intermediate (0.3-0.7) 7400744 16.09 % 4731413 12.58 % 127490 23.29 % 51380 16.53 %
Methylated (0.7-1) 32357237 70.33 % 28374049 75.47 % 315039 57.56 % 231789 74.55 %
Median Methylation 0.850 0.870 0.770 0.860