/EXTERNAL BLUEPRINT/K006284_14_lane_gembs/C0066P.Bisulfite-Seq.DNA_Methylation.EGAX00001147726_14

BACK

SAMPLE K006284_14_lane_gembs LANE C0066P.Bisulfite-Seq.DNA_Methylation.EGAX00001147726_14

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1109569024 100.00 % 554784512 100.00 % 554784512 100.00 %
General Reads 1057939482 95.35 % 530537961 95.63 % 527401521 95.06 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 16543760 1.49 % 8290375 1.49 % 8253385 1.49 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 35085782 3.16 % 15956176 2.88 % 19129606 3.45 %
Bisulfite_reads C2T 563721373 50.81 % 282697435 50.96 % 281023938 50.65 %
Bisulfite_reads G2A 510761869 46.03 % 256130901 46.17 % 254630968 45.90 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 433986665
Average Unique 78.23 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 40592443888 35.87 % 15791149036 27.91 % 24801294852 43.83 %
Base Counts Overall C 15537263979 13.73 % 1379914872 2.44 % 14157349107 25.02 %
Base Counts Overall G 15652126614 13.83 % 14329054266 25.32 % 1323072348 2.34 %
Base Counts Overall T 40240068740 35.56 % 24528326170 43.35 % 15711742570 27.77 %
Base Counts Overall N 1154137227 1.02 % 559575880 0.99 % 594561347 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9769901033943655
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 522683718



Mapping Quality

Mapping Quality Histogram
C0066P.Bisulfite-Seq.DNA_Methylation.EGAX00001147726_14.mapq.png



Read Length

Read Length Reads
101 554784512
101 554784512



Insert Size Plot

Insert Size Histogram
C0066P.Bisulfite-Seq.DNA_Methylation.EGAX00001147726_14.isize.png