/EXTERNAL BLUEPRINT/mapping_coverage/K006284_14_lane_gembs
BACK
SAMPLE K006284_14_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1031739865 |
100% |
92088697677 |
100% |
| Mapped |
1022456219 |
99.10 % |
91151049431 |
98.98 % |
| Passed |
807954721 |
78.31 % |
69486398133 |
75.46 % |
| NotPassed |
214501498 |
20.79 % |
21664651298 |
23.53 % |
| |
|
|
|
|
| LowMAPQ |
174855632 |
16.95 % |
17660418832 |
19.18 % |
| MateUnmapped |
9283646 |
0.90 % |
937648246 |
1.02 % |
| Duplicate |
26224888 |
2.54 % |
2648713688 |
2.88 % |
| BadOrientation |
10 |
0.00 % |
1010 |
0.00 % |
| LargeInsertSize |
11638 |
0.00 % |
1175438 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
13409330 |
1.30 % |
1354342330 |
1.47 % |
| Unmapped |
9283646 |
0.90 % |
937648246 |
1.02 % |
Base Level Counts
| Bases |
# |
% |
| Total |
81597878386 |
100% |
| Passed |
65104458546 |
79.79 % |
| Trimmed |
3432637057 |
4.21 % |
| Clipped |
89079227 |
0.11 % |
| Overlapping |
12022401026 |
14.73 % |
| LowQuality |
949302530 |
1.16 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |