/EXTERNAL BLUEPRINT/methylation/K006284_14_lane_gembs

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SAMPLE K006284_14_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26700867 21319656 79.85 %
NonRefCpG 359349 165073 45.94 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006284_14_lane_gembs_coverage_refCpG.png ./IMG//K006284_14_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006284_14_lane_gembs_coverage_nonRefCpG.png ./IMG//K006284_14_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006284_14_lane_gembs_quality_refcpg.png ./IMG//K006284_14_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006284_14_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5453441 10.97 % 4076272 9.54 % 128957 20.04 % 30886 7.88 %
Intermediate (0.3-0.7) 7236880 14.56 % 5149345 12.05 % 136300 21.18 % 64318 16.40 %
Methylated (0.7-1) 37027970 74.48 % 33500482 78.41 % 378282 58.78 % 296872 75.72 %
Median Methylation 0.870 0.890 0.790 0.870