/EXTERNAL BLUEPRINT/K006285_14_lane_gembs

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SAMPLE K006285_14_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1056840530 100.00 % 528420265 100.00 % 528420265 100.00 %
General Reads 1011630635 95.72 % 506957104 95.94 % 504673531 95.51 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 13394653 1.27 % 6708034 1.27 % 6686619 1.27 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 31815242 3.01 % 14755127 2.79 % 17060115 3.23 %
Bisulfite_reads C2T 535490078 50.67 % 268355969 50.78 % 267134109 50.55 %
Bisulfite_reads G2A 489535210 46.32 % 245309169 46.42 % 244226041 46.22 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 421349111
Average Unique 79.74 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 38588254743 35.80 % 15179965889 28.16 % 23408288854 43.43 %
Base Counts Overall C 14824367387 13.75 % 1189833917 2.21 % 13634533470 25.30 %
Base Counts Overall G 14871748604 13.80 % 13722176910 25.46 % 1149571694 2.13 %
Base Counts Overall T 38421455036 35.64 % 23270152313 43.17 % 15151302723 28.11 %
Base Counts Overall N 1091908290 1.01 % 536738001 1.00 % 555170289 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9803945920753162
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 500303442



Mapping Quality

Mapping Quality Histogram
K006285_14_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006285_14_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
S001S7.Bisulfite-Seq.DNA_Methylation.EGAX00001147727_14