/EXTERNAL BLUEPRINT/mapping_coverage/K006285_14_lane_gembs
BACK
SAMPLE K006285_14_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
970720959 |
100% |
87322554688 |
100% |
| Mapped |
962298902 |
99.13 % |
86471926931 |
99.03 % |
| Passed |
755563353 |
77.84 % |
65591636482 |
75.11 % |
| NotPassed |
206735549 |
21.30 % |
20880290449 |
23.91 % |
| |
|
|
|
|
| LowMAPQ |
154290726 |
15.89 % |
15583363326 |
17.85 % |
| MateUnmapped |
8422057 |
0.87 % |
850627757 |
0.97 % |
| Duplicate |
40943265 |
4.22 % |
4135269765 |
4.74 % |
| BadOrientation |
14 |
0.00 % |
1414 |
0.00 % |
| LargeInsertSize |
13606 |
0.00 % |
1374206 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
11487938 |
1.18 % |
1160281738 |
1.33 % |
| Unmapped |
8422057 |
0.87 % |
850627757 |
0.97 % |
Base Level Counts
| Bases |
# |
% |
| Total |
76306051763 |
100% |
| Passed |
61542487346 |
80.65 % |
| Trimmed |
3217301389 |
4.22 % |
| Clipped |
79856062 |
0.10 % |
| Overlapping |
10634559219 |
13.94 % |
| LowQuality |
831847747 |
1.09 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |