/EXTERNAL BLUEPRINT/K010490_K010491_2_lane_gembs

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SAMPLE K010490_K010491_2_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1266520384 100.00 % 633260192 100.00 % 633260192 100.00 %
General Reads 1217319470 96.12 % 608035675 96.02 % 609283795 96.21 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 5495701 0.43 % 2751015 0.43 % 2744686 0.43 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 43705213 3.45 % 22473502 3.55 % 21231711 3.35 %
Bisulfite_reads C2T 650960700 51.40 % 325359778 51.38 % 325600922 51.42 %
Bisulfite_reads G2A 571854471 45.15 % 285426912 45.07 % 286427559 45.23 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 415635246
Average Unique 65.63 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 43306954597 33.52 % 18948629272 29.34 % 24358325325 37.71 %
Base Counts Overall C 20819719704 16.12 % 1494190337 2.31 % 19325529367 29.92 %
Base Counts Overall G 21024355138 16.27 % 19422413722 30.07 % 1601941416 2.48 %
Base Counts Overall T 42719902427 33.07 % 24068962215 37.26 % 18650940212 28.87 %
Base Counts Overall N 1314147302 1.02 % 658344038 1.02 % 655803264 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9987281462948615
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 569627345



Mapping Quality

Mapping Quality Histogram
K010490_K010491_2_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K010490_K010491_2_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K010491_1798733_2
EXTERNAL-K010490_1798732_2