/EXTERNAL BLUEPRINT/mapping_coverage/K006262_19_lane_gembs
BACK
SAMPLE K006262_19_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2225017769 |
100% |
200253860931 |
100% |
| Mapped |
2200215264 |
98.89 % |
197748807926 |
98.75 % |
| Passed |
1728916919 |
77.70 % |
150147675081 |
74.98 % |
| NotPassed |
471298345 |
21.18 % |
47601132845 |
23.77 % |
| |
|
|
|
|
| LowMAPQ |
376856552 |
16.94 % |
38062511752 |
19.01 % |
| MateUnmapped |
24802505 |
1.11 % |
2505053005 |
1.25 % |
| Duplicate |
56866189 |
2.56 % |
5743485089 |
2.87 % |
| BadOrientation |
38 |
0.00 % |
3838 |
0.00 % |
| LargeInsertSize |
25484 |
0.00 % |
2573884 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
37550082 |
1.69 % |
3792558282 |
1.89 % |
| Unmapped |
24802505 |
1.11 % |
2505053005 |
1.25 % |
Base Level Counts
| Bases |
# |
% |
| Total |
174613148959 |
100% |
| Passed |
139059297724 |
79.64 % |
| Trimmed |
7395756282 |
4.24 % |
| Clipped |
354599099 |
0.20 % |
| Overlapping |
24110874779 |
13.81 % |
| LowQuality |
3692621075 |
2.11 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |