/EXTERNAL BLUEPRINT/K006270_8_lane_gembs/C001UY.Bisulfite-Seq.DNA_Methylation.EGAX00001097776_8

BACK

SAMPLE K006270_8_lane_gembs LANE C001UY.Bisulfite-Seq.DNA_Methylation.EGAX00001097776_8

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 2376641228 100.00 % 1188320614 100.00 % 1188320614 100.00 %
General Reads 2298353891 96.71 % 1152978203 97.03 % 1145375688 96.39 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 24783489 1.04 % 12423770 1.05 % 12359719 1.04 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 53503848 2.25 % 22918641 1.93 % 30585207 2.57 %
Bisulfite_reads C2T 1218718911 51.28 % 611413781 51.45 % 607305130 51.11 %
Bisulfite_reads G2A 1104418469 46.47 % 553988192 46.62 % 550430277 46.32 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 933539017
Average Unique 78.56 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 87995591818 36.30 % 34203809788 28.22 % 53791782030 44.38 %
Base Counts Overall C 31812808687 13.12 % 1702329179 1.40 % 30110479508 24.84 %
Base Counts Overall G 32351926350 13.35 % 30696524955 25.33 % 1655401395 1.37 %
Base Counts Overall T 87794619404 36.22 % 53390900186 44.05 % 34403719218 28.38 %
Base Counts Overall N 2462458997 1.02 % 1215138520 1.00 % 1247320477 1.03 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9983566252155684
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1127926840



Mapping Quality

Mapping Quality Histogram
C001UY.Bisulfite-Seq.DNA_Methylation.EGAX00001097776_8.mapq.png



Read Length

Read Length Reads
101 1188320614
101 1188320614



Insert Size Plot

Insert Size Histogram
C001UY.Bisulfite-Seq.DNA_Methylation.EGAX00001097776_8.isize.png