/EXTERNAL BLUEPRINT/mapping_coverage/K006270_8_lane_gembs
BACK
SAMPLE K006270_8_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
2251100931 |
100% |
203583897807 |
100% |
| Mapped |
2228513937 |
99.00 % |
201302611413 |
98.88 % |
| Passed |
1767050126 |
78.50 % |
154694766502 |
75.99 % |
| NotPassed |
461463811 |
20.50 % |
46607844911 |
22.89 % |
| |
|
|
|
|
| LowMAPQ |
382163368 |
16.98 % |
38598500168 |
18.96 % |
| MateUnmapped |
22586994 |
1.00 % |
2281286394 |
1.12 % |
| Duplicate |
47293570 |
2.10 % |
4776650570 |
2.35 % |
| BadOrientation |
46 |
0.00 % |
4646 |
0.00 % |
| LargeInsertSize |
25188 |
0.00 % |
2543988 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
31981639 |
1.42 % |
3230145539 |
1.59 % |
| Unmapped |
22586994 |
1.00 % |
2281286394 |
1.12 % |
Base Level Counts
| Bases |
# |
% |
| Total |
178463822540 |
100% |
| Passed |
144444826885 |
80.94 % |
| Trimmed |
7654065329 |
4.29 % |
| Clipped |
232151523 |
0.13 % |
| Overlapping |
23536904515 |
13.19 % |
| LowQuality |
2595874288 |
1.45 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |