/EXTERNAL BLUEPRINT/methylation/K006270_8_lane_gembs

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SAMPLE K006270_8_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26994665 23685542 87.74 %
NonRefCpG 297721 188084 63.17 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006270_8_lane_gembs_coverage_refCpG.png ./IMG//K006270_8_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006270_8_lane_gembs_coverage_nonRefCpG.png ./IMG//K006270_8_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006270_8_lane_gembs_quality_refcpg.png ./IMG//K006270_8_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006270_8_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6264645 12.39 % 5372446 11.55 % 68892 12.97 % 26613 6.75 %
Intermediate (0.3-0.7) 5591622 11.06 % 4440003 9.55 % 91805 17.29 % 49265 12.50 %
Methylated (0.7-1) 38709270 76.55 % 36688096 78.90 % 370271 69.74 % 318225 80.75 %
Median Methylation 0.880 0.890 0.850 0.890