{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 51193327, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 50494140, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.63, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 34883406, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 34265458, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.23, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 41875983, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 36684997, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.876039
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 27351165, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 7770921, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.284117
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 41875247, 
            "distinct_read_pairs": 5880761, 
            "one_read_pair": 946515, 
            "two_read_pair": 413989, 
            "NRF": 0.140435, 
            "PBC1": 0.160951, 
            "PBC2": 2.286329
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 27343269, 
            "distinct_read_pairs": 19758452, 
            "one_read_pair": 14150560, 
            "two_read_pair": 4147607, 
            "NRF": 0.722608, 
            "PBC1": 0.716178, 
            "PBC2": 3.411741
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 5190986, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 5190986, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 19580244, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 19580244, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 87685, 
        "Np": 0, 
        "N_opt": 87685, 
        "N_consv": 87685, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 210, 
            "corr_est_frag_len": 0.111372309425121, 
            "phantom_peak": 40, 
            "corr_phantom_peak": 0.06711154, 
            "argmin_corr": 1500, 
            "min_corr": 0.05780037, 
            "NSC": 1.926844, 
            "RSC": 5.753514
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.501514479884
        }, 
        "rep1-pr1": {
            "FRiP": 0.466726335281
        }, 
        "rep1-pr2": {
            "FRiP": 0.466532714043
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.401682871014
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.0800248590693, 
            "auc": 0.476198298469, 
            "ch_div": 0.663265183716, 
            "elbow_pt": 1.79068502191e-14, 
            "jsd": 0.692027174543, 
            "syn_auc": 0.528391178843, 
            "syn_elbow_pt": 0.258264662777, 
            "syn_jsd": 0.362325117322
        }
    ]
}
