/EXTERNAL BLUEPRINT/mapping_coverage/K006260_19_lane_gembs
BACK
SAMPLE K006260_19_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1747745775 |
100% |
158560564048 |
100% |
| Mapped |
1729484413 |
98.96 % |
156716166486 |
98.84 % |
| Passed |
1402095579 |
80.22 % |
123649894252 |
77.98 % |
| NotPassed |
327388834 |
18.73 % |
33066272234 |
20.85 % |
| |
|
|
|
|
| LowMAPQ |
261539186 |
14.96 % |
26415457786 |
16.66 % |
| MateUnmapped |
18261362 |
1.04 % |
1844397562 |
1.16 % |
| Duplicate |
39027534 |
2.23 % |
3941780934 |
2.49 % |
| BadOrientation |
20 |
0.00 % |
2020 |
0.00 % |
| LargeInsertSize |
16216 |
0.00 % |
1637816 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
26805878 |
1.53 % |
2707393678 |
1.71 % |
| Unmapped |
18261362 |
1.04 % |
1844397562 |
1.16 % |
Base Level Counts
| Bases |
# |
% |
| Total |
141604829212 |
100% |
| Passed |
114698340361 |
81.00 % |
| Trimmed |
6065048245 |
4.28 % |
| Clipped |
270359450 |
0.19 % |
| Overlapping |
17684575510 |
12.49 % |
| LowQuality |
2886505646 |
2.04 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |