/EXTERNAL BLUEPRINT/methylation/K006260_19_lane_gembs

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SAMPLE K006260_19_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26948804 24118870 89.50 %
NonRefCpG 289786 189052 65.24 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006260_19_lane_gembs_coverage_refCpG.png ./IMG//K006260_19_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006260_19_lane_gembs_coverage_nonRefCpG.png ./IMG//K006260_19_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006260_19_lane_gembs_quality_refcpg.png ./IMG//K006260_19_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006260_19_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6182693 11.86 % 5413629 11.17 % 74243 13.78 % 29708 7.21 %
Intermediate (0.3-0.7) 6443671 12.36 % 5378833 11.10 % 93905 17.43 % 57638 13.99 %
Methylated (0.7-1) 39496457 75.78 % 37656226 77.72 % 370758 68.80 % 324658 78.80 %
Median Methylation 0.870 0.880 0.840 0.870