/EXTERNAL BLUEPRINT/K006304_K006315_17_lane_gembs/S00BJM.Bisulfite-Seq.DNA_Methylation.EGAX00001208458_16

BACK

SAMPLE K006304_K006315_17_lane_gembs LANE S00BJM.Bisulfite-Seq.DNA_Methylation.EGAX00001208458_16

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1087193166 100.00 % 543596583 100.00 % 543596583 100.00 %
General Reads 1032726783 94.99 % 516894954 95.09 % 515831829 94.89 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 19883131 1.83 % 9962473 1.83 % 9920658 1.83 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 34583252 3.18 % 16739156 3.08 % 17844096 3.28 %
Bisulfite_reads C2T 551739113 50.75 % 276193883 50.81 % 275545230 50.69 %
Bisulfite_reads G2A 500870801 46.07 % 250663544 46.11 % 250207257 46.03 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 407833659
Average Unique 75.03 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 39858611855 35.97 % 16088220663 29.04 % 23770391192 42.90 %
Base Counts Overall C 15162744901 13.68 % 904458191 1.63 % 14258286710 25.74 %
Base Counts Overall G 15531979465 14.02 % 14593190648 26.34 % 938788817 1.69 %
Base Counts Overall T 39153368094 35.33 % 23270366441 42.00 % 15883001653 28.67 %
Base Counts Overall N 1101399605 0.99 % 547816017 0.99 % 553583588 1.00 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9988837264434437
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 501611992



Mapping Quality

Mapping Quality Histogram
S00BJM.Bisulfite-Seq.DNA_Methylation.EGAX00001208458_16.mapq.png



Read Length

Read Length Reads
101 500797077
100 42799506
101 500797077
100 42799506



Insert Size Plot

Insert Size Histogram
S00BJM.Bisulfite-Seq.DNA_Methylation.EGAX00001208458_16.isize.png