/EXTERNAL BLUEPRINT/K006304_K006315_17_lane_gembs/S00BJM.Bisulfite-Seq.DNA_Methylation.EGAX00001208469.cnag-blueprint-17_C3R02ACXX

BACK

SAMPLE K006304_K006315_17_lane_gembs LANE S00BJM.Bisulfite-Seq.DNA_Methylation.EGAX00001208469.cnag-blueprint-17_C3R02ACXX

Mapping Stats (Reads)

Concept	Total Reads	%	Pair One Reads	%	Pair Two Reads	%
Sequenced Reads	12623612	100.00 %	6311806	100.00 %	6311806	100.00 %
General Reads	11263271	89.22 %	5567374	88.21 %	5695897	90.24 %
Reads in Control sequences	0	0.00 %	0	0.00 %	0	0.00 %
Reads under conversion control	263598	2.09 %	131773	2.09 %	131825	2.09 %
Reads over conversion control	0	0.00 %	0	0.00 %	0	0.00 %
Unmapped reads	1096743	8.69 %	612659	9.71 %	484084	7.67 %
Bisulfite_reads C2T	6237963	49.42 %	3092225	48.99 %	3145738	49.84 %
Bisulfite_reads G2A	5288906	41.90 %	2606922	41.30 %	2681984	42.49 %

Uniqueness (Fragments)

Concept	Value
Unique Fragments	3574069
Average Unique	56.63 %

Mapping Stats (Bases)

Concept	Total Bases	%	Pair One Bases	%	Pair Two Bases	%
Base Counts Overall A	424639347	32.98 %	192125057	29.84 %	232514290	36.12 %
Base Counts Overall C	218770752	16.99 %	24205249	3.76 %	194565503	30.22 %
Base Counts Overall G	227638102	17.68 %	197638425	30.70 %	29999677	4.66 %
Base Counts Overall T	403891056	31.37 %	223488942	34.71 %	180402114	28.02 %
Base Counts Overall N	12669167	0.98 %	6346539	0.99 %	6322628	0.98 %

Bisulfite Conversion Rate

Bisulfite Conversion Type	Conversion Rate
Conversion Rate	0.9987917304004001
Over Conversion Rate	NA

Correct Pairs

Concept	Total Reads
Correct Pairs	5163341

Mapping Quality

Mapping Quality Histogram

Read Length

Read Length	Reads
101	6311806
101	6311806

Insert Size Plot

Insert Size Histogram