/EXTERNAL BLUEPRINT/mapping_coverage/K006304_K006315_17_lane_gembs
BACK
SAMPLE K006304_K006315_17_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
999281387 |
100% |
96957048418 |
100% |
| Mapped |
984810144 |
98.55 % |
95496465562 |
98.49 % |
| Passed |
721428957 |
72.19 % |
68912310406 |
71.08 % |
| NotPassed |
263381187 |
26.36 % |
26584155156 |
27.42 % |
| |
|
|
|
|
| LowMAPQ |
196937970 |
19.71 % |
19875588438 |
20.50 % |
| MateUnmapped |
14471243 |
1.45 % |
1460582856 |
1.51 % |
| Duplicate |
44871774 |
4.49 % |
4531428934 |
4.67 % |
| BadOrientation |
48 |
0.00 % |
4848 |
0.00 % |
| LargeInsertSize |
39276 |
0.00 % |
3965302 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
21532119 |
2.15 % |
2173167634 |
2.24 % |
| Unmapped |
14471243 |
1.45 % |
1460582856 |
1.51 % |
Base Level Counts
| Bases |
# |
% |
| Total |
72777251818 |
100% |
| Passed |
64092677095 |
88.07 % |
| Trimmed |
3409969788 |
4.69 % |
| Clipped |
97053611 |
0.13 % |
| Overlapping |
3767887801 |
5.18 % |
| LowQuality |
1409663523 |
1.94 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |