/EXTERNAL BLUEPRINT/methylation/K006304_K006315_17_lane_gembs
BACK
SAMPLE K006304_K006315_17_lane_gembs
CpG counts
| Type |
Total |
Pass |
% |
| RefCpG |
26567853 |
18831528 |
70.88 % |
| NonRefCpG |
344303 |
137113 |
39.82 % |
Coverage CpGs
| Coverage Reference CpGs |
Coverage Information Reads Reference CpGs |
 |
 |
| Coverage Non Reference CpGs |
Coverage Information Reads Non-Reference CpGs |
 |
 |
Quality CpGs
| Genotype Quality Phred scaled Reference CpGs |
Genotype Quality Phred scaled Non-Reference CpGs |
 |
 |
Methylation CpGs
| CpGs Methylation Distribution |
 |
CpG Methylation Profile (From Individual Strands)
| Type |
#AllReferenceCpG |
% |
#PassedReferenceCpG |
% |
#AllNonReferenceCpG |
% |
#PassedNonReferenceCpG |
% |
| Unmethylated (0-0.3) |
6705378 |
14.21 % |
4683021 |
12.42 % |
129312 |
22.20 % |
33294 |
10.42 % |
| Intermediate (0.3-0.7) |
9298657 |
19.71 % |
5825760 |
15.45 % |
149745 |
25.70 % |
62500 |
19.56 % |
| Methylated (0.7-1) |
31167404 |
66.07 % |
27196255 |
72.13 % |
303551 |
52.10 % |
223707 |
70.02 % |
| |
|
|
|
|
|
|
|
|
| Median Methylation |
0.820 |
|
0.850 |
|
0.720 |
|
0.840 |
|