{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 34927035, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 32935937, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 94.3, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 26253843, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 25781415, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 98.2, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 26890548, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 8533124, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.317328
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 20692487, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 6497127, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.313985
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 26887534, 
            "distinct_read_pairs": 18629119, 
            "one_read_pair": 12827403, 
            "two_read_pair": 4094483, 
            "NRF": 0.692853, 
            "PBC1": 0.688567, 
            "PBC2": 3.13285
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 20684033, 
            "distinct_read_pairs": 14335442, 
            "one_read_pair": 9700133, 
            "two_read_pair": 3373531, 
            "NRF": 0.693068, 
            "PBC1": 0.676654, 
            "PBC2": 2.875365
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 18357424, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 18357424, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 14195360, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 14195360, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 35179, 
        "Np": 0, 
        "N_opt": 35179, 
        "N_consv": 35179, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 175, 
            "corr_est_frag_len": 0.169729119059428, 
            "phantom_peak": 40, 
            "corr_phantom_peak": 0.1587322, 
            "argmin_corr": 1500, 
            "min_corr": 0.1351316, 
            "NSC": 1.256028, 
            "RSC": 1.465958
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.147764515267
        }, 
        "rep1-pr1": {
            "FRiP": 0.165327552369
        }, 
        "rep1-pr2": {
            "FRiP": 0.165105837438
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.139605832938
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.230723404348, 
            "auc": 0.487319194107, 
            "ch_div": 0.193508658987, 
            "elbow_pt": 2.00065737896e-52, 
            "jsd": 0.584982426116, 
            "syn_auc": 0.492778271593, 
            "syn_elbow_pt": 0.183965461179, 
            "syn_jsd": 0.31563412864
        }
    ]
}
