/EXTERNAL BLUEPRINT/K006268_10_lane_gembs/C004SQ.Bisulfite-Seq.DNA_Methylation.EGAX00001097774_10

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SAMPLE K006268_10_lane_gembs LANE C004SQ.Bisulfite-Seq.DNA_Methylation.EGAX00001097774_10

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 3711476992 100.00 % 1855738496 100.00 % 1855738496 100.00 %
General Reads 3568002286 96.13 % 1790867726 96.50 % 1777134560 95.76 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 65960828 1.78 % 33082822 1.78 % 32878006 1.77 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 77513878 2.09 % 31787948 1.71 % 45725930 2.46 %
Bisulfite_reads C2T 1899288198 51.17 % 953313066 51.37 % 945975132 50.98 %
Bisulfite_reads G2A 1734674916 46.74 % 870637482 46.92 % 864037434 46.56 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 1485943724
Average Unique 80.07 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 137493961643 36.36 % 53512650998 28.30 % 83981310645 44.41 %
Base Counts Overall C 49663920162 13.13 % 2504323293 1.32 % 47159596869 24.94 %
Base Counts Overall G 50618366015 13.38 % 48162095678 25.47 % 2456270337 1.30 %
Base Counts Overall T 136543246082 36.11 % 83025738515 43.91 % 53517507567 28.30 %
Base Counts Overall N 3863772020 1.02 % 1886824477 1.00 % 1976947543 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991329018520481
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 1765631970



Mapping Quality

Mapping Quality Histogram
C004SQ.Bisulfite-Seq.DNA_Methylation.EGAX00001097774_10.mapq.png



Read Length

Read Length Reads
100 193693631
101 1662044865
100 193693631
101 1662044865



Insert Size Plot

Insert Size Histogram
C004SQ.Bisulfite-Seq.DNA_Methylation.EGAX00001097774_10.isize.png