/EXTERNAL BLUEPRINT/mapping_coverage/K006268_10_lane_gembs
BACK
SAMPLE K006268_10_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
3394701414 |
100% |
302195085390 |
100% |
| Mapped |
3358203020 |
98.92 % |
298512582137 |
98.78 % |
| Passed |
2590068596 |
76.30 % |
220996568364 |
73.13 % |
| NotPassed |
768134424 |
22.63 % |
77516013773 |
25.65 % |
| |
|
|
|
|
| LowMAPQ |
549775552 |
16.20 % |
55470277688 |
18.36 % |
| MateUnmapped |
36498394 |
1.08 % |
3682503253 |
1.22 % |
| Duplicate |
173507802 |
5.11 % |
17520582112 |
5.80 % |
| BadOrientation |
64 |
0.00 % |
6462 |
0.00 % |
| LargeInsertSize |
45500 |
0.00 % |
4590590 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
44805506 |
1.32 % |
4520556921 |
1.50 % |
| Unmapped |
36498394 |
1.08 % |
3682503253 |
1.22 % |
Base Level Counts
| Bases |
# |
% |
| Total |
261290770401 |
100% |
| Passed |
206079363191 |
78.87 % |
| Trimmed |
11047754946 |
4.23 % |
| Clipped |
361746159 |
0.14 % |
| Overlapping |
39932455878 |
15.28 % |
| LowQuality |
3869450227 |
1.48 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |