/EXTERNAL BLUEPRINT/methylation/K006268_10_lane_gembs

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SAMPLE K006268_10_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26939674 22251750 82.60 %
NonRefCpG 292981 175498 59.90 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006268_10_lane_gembs_coverage_refCpG.png ./IMG//K006268_10_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006268_10_lane_gembs_coverage_nonRefCpG.png ./IMG//K006268_10_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006268_10_lane_gembs_quality_refcpg.png ./IMG//K006268_10_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006268_10_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6071788 11.94 % 5141525 11.24 % 62224 11.84 % 24000 6.25 %
Intermediate (0.3-0.7) 5236341 10.30 % 4017653 8.78 % 86141 16.39 % 43549 11.34 %
Methylated (0.7-1) 39528426 77.76 % 36575940 79.97 % 377050 71.76 % 316493 82.41 %
Median Methylation 0.890 0.900 0.870 0.900