/EXTERNAL BLUEPRINT/K006278_K006282_11_lane_gembs/25386.Bisulfite-Seq.DNA_Methylation.EGAX00001128260_8

BACK

SAMPLE K006278_K006282_11_lane_gembs LANE 25386.Bisulfite-Seq.DNA_Methylation.EGAX00001128260_8

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 897248046 100.00 % 448624023 100.00 % 448624023 100.00 %
General Reads 877501528 97.80 % 440031042 98.08 % 437470486 97.51 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 8047327 0.90 % 4032656 0.90 % 4014671 0.89 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 11699191 1.30 % 4560325 1.02 % 7138866 1.59 %
Bisulfite_reads C2T 467708160 52.13 % 234540581 52.28 % 233167579 51.97 %
Bisulfite_reads G2A 417840695 46.57 % 209523117 46.70 % 208317578 46.43 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 357821294
Average Unique 79.76 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 32934236080 35.99 % 12908760490 28.21 % 20025475590 43.76 %
Base Counts Overall C 12295942890 13.44 % 454205320 0.99 % 11841737570 25.88 %
Base Counts Overall G 12542019121 13.70 % 12104171655 26.45 % 437847466 0.96 %
Base Counts Overall T 32775941012 35.81 % 19839777951 43.36 % 12936163061 28.27 %
Base Counts Overall N 971161589 1.06 % 452734930 0.99 % 518426659 1.13 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9995104678198468
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 431107139



Mapping Quality

Mapping Quality Histogram
25386.Bisulfite-Seq.DNA_Methylation.EGAX00001128260_8.mapq.png



Read Length

Read Length Reads
101 448624023
101 448624023



Insert Size Plot

Insert Size Histogram
25386.Bisulfite-Seq.DNA_Methylation.EGAX00001128260_8.isize.png