/EXTERNAL BLUEPRINT/K006278_K006282_11_lane_gembs/25386.Bisulfite-Seq.DNA_Methylation.EGAX00001128266_3

BACK

SAMPLE K006278_K006282_11_lane_gembs LANE 25386.Bisulfite-Seq.DNA_Methylation.EGAX00001128266_3

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 982745204 100.00 % 491372602 100.00 % 491372602 100.00 %
General Reads 941430818 95.80 % 472545736 96.17 % 468885082 95.42 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 9518857 0.97 % 4776100 0.97 % 4742757 0.97 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 31795529 3.24 % 14050766 2.86 % 17744763 3.61 %
Bisulfite_reads C2T 501574491 51.04 % 251762965 51.24 % 249811526 50.84 %
Bisulfite_reads G2A 449375184 45.73 % 225558871 45.90 % 223816313 45.55 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 383995037
Average Unique 78.15 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 35921674857 35.84 % 14007933508 27.95 % 21913741349 43.72 %
Base Counts Overall C 13608161729 13.58 % 699114949 1.39 % 12909046780 25.76 %
Base Counts Overall G 13825611506 13.79 % 13146245785 26.23 % 679365721 1.36 %
Base Counts Overall T 35686648666 35.60 % 21749644622 43.40 % 13937004044 27.81 %
Base Counts Overall N 1197914050 1.20 % 517066540 1.03 % 680847510 1.36 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9994209826060131
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 462209398



Mapping Quality

Mapping Quality Histogram
25386.Bisulfite-Seq.DNA_Methylation.EGAX00001128266_3.mapq.png



Read Length

Read Length Reads
101 491372602
101 491372602



Insert Size Plot

Insert Size Histogram
25386.Bisulfite-Seq.DNA_Methylation.EGAX00001128266_3.isize.png