/EXTERNAL BLUEPRINT/mapping_coverage/K006278_K006282_11_lane_gembs
BACK
SAMPLE K006278_K006282_11_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1790771906 |
100% |
163642682947 |
100% |
| Mapped |
1772630258 |
98.99 % |
161810376499 |
98.88 % |
| Passed |
1424154755 |
79.53 % |
126614350696 |
77.37 % |
| NotPassed |
348475503 |
19.46 % |
35196025803 |
21.51 % |
| |
|
|
|
|
| LowMAPQ |
296765124 |
16.57 % |
29973277524 |
18.32 % |
| MateUnmapped |
18141648 |
1.01 % |
1832306448 |
1.12 % |
| Duplicate |
28177219 |
1.57 % |
2845899119 |
1.74 % |
| BadOrientation |
22 |
0.00 % |
2222 |
0.00 % |
| LargeInsertSize |
23362 |
0.00 % |
2359562 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
23509776 |
1.31 % |
2374487376 |
1.45 % |
| Unmapped |
18141648 |
1.01 % |
1832306448 |
1.12 % |
Base Level Counts
| Bases |
# |
% |
| Total |
143832121309 |
100% |
| Passed |
118339766121 |
82.28 % |
| Trimmed |
6180879295 |
4.30 % |
| Clipped |
219791271 |
0.15 % |
| Overlapping |
16997979342 |
11.82 % |
| LowQuality |
2093705280 |
1.46 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |