/EXTERNAL BLUEPRINT/K006261_19_lane_gembs/C000S5.Bisulfite-Seq.DNA_Methylation.EGAX00001086969_19

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SAMPLE K006261_19_lane_gembs LANE C000S5.Bisulfite-Seq.DNA_Methylation.EGAX00001086969_19

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1924059354 100.00 % 962029677 100.00 % 962029677 100.00 %
General Reads 1875528604 97.48 % 940586954 97.77 % 934941650 97.18 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 10461754 0.54 % 5243856 0.55 % 5217898 0.54 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 38068996 1.98 % 16198867 1.68 % 21870129 2.27 %
Bisulfite_reads C2T 979329771 50.90 % 491172074 51.06 % 488157697 50.74 %
Bisulfite_reads G2A 906660587 47.12 % 454658736 47.26 % 452001851 46.98 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 766912485
Average Unique 79.72 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 73304934888 37.35 % 28702035471 29.25 % 44602899417 45.45 %
Base Counts Overall C 23657010558 12.05 % 1167275679 1.19 % 22489734879 22.92 %
Base Counts Overall G 24101805943 12.28 % 23028719694 23.47 % 1073086249 1.09 %
Base Counts Overall T 73136044954 37.27 % 44203688154 45.05 % 28932356800 29.48 %
Base Counts Overall N 2054257765 1.05 % 1025308056 1.04 % 1028949709 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.998034220355588
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 913194546



Mapping Quality

Mapping Quality Histogram
C000S5.Bisulfite-Seq.DNA_Methylation.EGAX00001086969_19.mapq.png



Read Length

Read Length Reads
101 962029677
101 962029677



Insert Size Plot

Insert Size Histogram
C000S5.Bisulfite-Seq.DNA_Methylation.EGAX00001086969_19.isize.png