/EXTERNAL BLUEPRINT/methylation/K006261_19_lane_gembs

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SAMPLE K006261_19_lane_gembs




CpG counts

Type Total Pass %
RefCpG 27032227 24066612 89.03 %
NonRefCpG 290299 192652 66.36 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006261_19_lane_gembs_coverage_refCpG.png ./IMG//K006261_19_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006261_19_lane_gembs_coverage_nonRefCpG.png ./IMG//K006261_19_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006261_19_lane_gembs_quality_refcpg.png ./IMG//K006261_19_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006261_19_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6398879 12.19 % 5466908 11.24 % 75037 13.80 % 30690 7.31 %
Intermediate (0.3-0.7) 6474298 12.33 % 5420455 11.14 % 93461 17.18 % 58772 14.01 %
Methylated (0.7-1) 39641005 75.49 % 37752877 77.62 % 375413 69.02 % 330142 78.68 %
Median Methylation 0.870 0.870 0.840 0.870