{
    "name": "Untitled", 
    "desc": "No description", 
    "flagstat_qc": [
        {
            "total": 50277121, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 41679952, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 82.9, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_flagstat_qc": [
        {
            "total": 22703396, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 22040375, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 97.08, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "dup_qc": [
        {
            "unpaired_reads": 33061000, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 12017783, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.363503
        }
    ], 
    "ctl_dup_qc": [
        {
            "unpaired_reads": 17196797, 
            "paired_reads": 0, 
            "unmapped_reads": 0, 
            "unpaired_dupes": 7750832, 
            "paired_dupes": 0, 
            "paired_opt_dupes": 0, 
            "dupes_pct": 0.450714
        }
    ], 
    "pbc_qc": [
        {
            "total_read_pairs": 33057929, 
            "distinct_read_pairs": 21399463, 
            "one_read_pair": 13645088, 
            "two_read_pair": 5119478, 
            "NRF": 0.647332, 
            "PBC1": 0.637637, 
            "PBC2": 2.665328
        }
    ], 
    "ctl_pbc_qc": [
        {
            "total_read_pairs": 17178377, 
            "distinct_read_pairs": 9587001, 
            "one_read_pair": 5336205, 
            "two_read_pair": 2317395, 
            "NRF": 0.558085, 
            "PBC1": 0.556608, 
            "PBC2": 2.302674
        }
    ], 
    "nodup_flagstat_qc": [
        {
            "total": 21043217, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 21043217, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "ctl_nodup_flagstat_qc": [
        {
            "total": 9445965, 
            "total_qc_failed": 0, 
            "duplicates": 0, 
            "duplicates_qc_failed": 0, 
            "mapped": 9445965, 
            "mapped_qc_failed": 0, 
            "mapped_pct": 100.0, 
            "paired": 0, 
            "paired_qc_failed": 0, 
            "read1": 0, 
            "read1_qc_failed": 0, 
            "read2": 0, 
            "read2_qc_failed": 0, 
            "paired_properly": 0, 
            "paired_properly_qc_failed": 0, 
            "paired_properly_pct": 0.0, 
            "with_itself": 0, 
            "with_itself_qc_failed": 0, 
            "singletons": 0, 
            "singletons_qc_failed": 0, 
            "singletons_pct": 0.0, 
            "diff_chroms": 0, 
            "diff_chroms_qc_failed": 0
        }
    ], 
    "overlap_reproducibility_qc": {
        "Nt": 0, 
        "N1": 1417, 
        "Np": 0, 
        "N_opt": 1417, 
        "N_consv": 1417, 
        "opt_set": "rep1-pr", 
        "consv_set": "rep1-pr", 
        "rescue_ratio": 0.0, 
        "self_consistency_ratio": 1.0, 
        "reproducibility": "pass"
    }, 
    "xcor_score": [
        {
            "num_reads": 15000000, 
            "est_frag_len": 170, 
            "corr_est_frag_len": 0.157268044153294, 
            "phantom_peak": 40, 
            "corr_phantom_peak": 0.147852, 
            "argmin_corr": 1500, 
            "min_corr": 0.1365557, 
            "NSC": 1.151677, 
            "RSC": 1.833551
        }
    ], 
    "frip_macs2_qc": {
        "rep1": {
            "FRiP": 0.00425367112782
        }, 
        "rep1-pr1": {
            "FRiP": 0.0112024159662
        }, 
        "rep1-pr2": {
            "FRiP": 0.0113228454785
        }
    }, 
    "overlap_frip_qc": {
        "rep1-pr": {
            "FRiP": 0.00119084541803
        }
    }, 
    "jsd_qc": [
        {
            "pct_gen_enrich": 0.268333995091, 
            "auc": 0.488169184922, 
            "ch_div": 0.170294737431, 
            "elbow_pt": 2.29106807445e-60, 
            "jsd": 0.573480428811, 
            "syn_auc": 0.512564544238, 
            "syn_elbow_pt": 0.0640138054119, 
            "syn_jsd": 0.238731214271
        }
    ]
}
