/EXTERNAL BLUEPRINT/K010493_1_lane_gembs

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SAMPLE K010493_1_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1211960790 100.00 % 605980395 100.00 % 605980395 100.00 %
General Reads 1164633472 96.09 % 584157558 96.40 % 580475914 95.79 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 25343995 2.09 % 12697657 2.10 % 12646338 2.09 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 21983323 1.81 % 9125180 1.51 % 12858143 2.12 %
Bisulfite_reads C2T 622528318 51.37 % 312262388 51.53 % 310265930 51.20 %
Bisulfite_reads G2A 567449149 46.82 % 284592827 46.96 % 282856322 46.68 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 482632538
Average Unique 79.64 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 44269551297 35.81 % 17362408683 28.09 % 26907142614 43.53 %
Base Counts Overall C 17002967983 13.75 % 864030028 1.40 % 16138937955 26.11 %
Base Counts Overall G 17180397648 13.90 % 16358259277 26.47 % 822138371 1.33 %
Base Counts Overall T 43909033160 35.52 % 26613891271 43.06 % 17295141889 27.98 %
Base Counts Overall N 1258050492 1.02 % 611411031 0.99 % 646639461 1.05 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9985050561407272
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 577568532



Mapping Quality

Mapping Quality Histogram
K010493_1_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K010493_1_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
EXTERNAL-K010493_1798735_2