/EXTERNAL BLUEPRINT/mapping_coverage/K010493_1_lane_gembs
BACK
SAMPLE K010493_1_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1139960938 |
100% |
102835790215 |
100% |
| Mapped |
1128200565 |
98.97 % |
101647992542 |
98.84 % |
| Passed |
900780242 |
79.02 % |
78678539919 |
76.51 % |
| NotPassed |
227420323 |
19.95 % |
22969452623 |
22.34 % |
| |
|
|
|
|
| LowMAPQ |
184943602 |
16.22 % |
18679303802 |
18.16 % |
| MateUnmapped |
11760373 |
1.03 % |
1187797673 |
1.16 % |
| Duplicate |
24684028 |
2.17 % |
2493086828 |
2.42 % |
| BadOrientation |
32 |
0.00 % |
3232 |
0.00 % |
| LargeInsertSize |
18278 |
0.00 % |
1846078 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
17774383 |
1.56 % |
1795212683 |
1.75 % |
| Unmapped |
11760373 |
1.03 % |
1187797673 |
1.16 % |
Base Level Counts
| Bases |
# |
% |
| Total |
90973830394 |
100% |
| Passed |
73296951289 |
80.57 % |
| Trimmed |
3838044070 |
4.22 % |
| Clipped |
124696704 |
0.14 % |
| Overlapping |
12170593771 |
13.38 % |
| LowQuality |
1543544560 |
1.70 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |