/EXTERNAL BLUEPRINT/methylation/K010493_1_lane_gembs

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SAMPLE K010493_1_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26565540 20199258 76.04 %
NonRefCpG 328710 149343 45.43 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K010493_1_lane_gembs_coverage_refCpG.png ./IMG//K010493_1_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K010493_1_lane_gembs_coverage_nonRefCpG.png ./IMG//K010493_1_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K010493_1_lane_gembs_quality_refcpg.png ./IMG//K010493_1_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K010493_1_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 6541716 13.80 % 4672667 11.79 % 114862 20.62 % 33168 10.01 %
Intermediate (0.3-0.7) 7548633 15.92 % 4902639 12.37 % 126139 22.65 % 54168 16.34 %
Methylated (0.7-1) 33322520 70.28 % 30051932 75.84 % 315912 56.73 % 244111 73.65 %
Median Methylation 0.870 0.890 0.770 0.880