/EXTERNAL BLUEPRINT/K006295_K006299_22_lane_gembs/C003JB.Bisulfite-Seq.DNA_Methylation.EGAX00001195941_2

BACK

SAMPLE K006295_K006299_22_lane_gembs LANE C003JB.Bisulfite-Seq.DNA_Methylation.EGAX00001195941_2

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 113310408 100.00 % 56655204 100.00 % 56655204 100.00 %
General Reads 108407291 95.67 % 54272404 95.79 % 54134887 95.55 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 2257908 1.99 % 1129725 1.99 % 1128183 1.99 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 2645209 2.33 % 1253075 2.21 % 1392134 2.46 %
Bisulfite_reads C2T 59589534 52.59 % 29845926 52.68 % 29743608 52.50 %
Bisulfite_reads G2A 51075665 45.08 % 25556203 45.11 % 25519462 45.04 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 40678111
Average Unique 71.80 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 3932993247 34.03 % 1652660620 28.60 % 2280332627 39.46 %
Base Counts Overall C 1792459103 15.51 % 94367456 1.63 % 1698091647 29.38 %
Base Counts Overall G 1797516065 15.55 % 1704914227 29.50 % 92601838 1.60 %
Base Counts Overall T 3912772619 33.85 % 2268745348 39.26 % 1644027271 28.45 %
Base Counts Overall N 121920582 1.05 % 58143157 1.01 % 63777425 1.10 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9989775154175626
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 52623613



Mapping Quality

Mapping Quality Histogram
C003JB.Bisulfite-Seq.DNA_Methylation.EGAX00001195941_2.mapq.png



Read Length

Read Length Reads
101 56655204
101 56655204



Insert Size Plot

Insert Size Histogram
C003JB.Bisulfite-Seq.DNA_Methylation.EGAX00001195941_2.isize.png