/EXTERNAL BLUEPRINT/K006295_K006299_22_lane_gembs

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SAMPLE K006295_K006299_22_lane_gembs




Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1682286052 100.00 % 841143026 100.00 % 841143026 100.00 %
General Reads 1598758812 95.03 % 801748026 95.32 % 797010786 94.75 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 32739103 1.95 % 16398171 1.95 % 16340932 1.94 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 50788137 3.02 % 22996829 2.73 % 27791308 3.30 %
Bisulfite_reads C2T 868397509 51.62 % 435569614 51.78 % 432827895 51.46 %
Bisulfite_reads G2A 763100406 45.36 % 382576583 45.48 % 380523823 45.24 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 627412244
Average Unique 74.59 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 59654322476 34.76 % 24461863162 28.51 % 35192459314 41.02 %
Base Counts Overall C 25373461941 14.79 % 1420958646 1.66 % 23952503295 27.92 %
Base Counts Overall G 25525165433 14.88 % 24168842318 28.17 % 1356323115 1.58 %
Base Counts Overall T 59292136827 34.55 % 34886549905 40.66 % 24405586922 28.45 %
Base Counts Overall N 1748090627 1.02 % 858374621 1.00 % 889716006 1.04 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9991032570362366
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 782534288



Mapping Quality

Mapping Quality Histogram
K006295_K006299_22_lane_gembs.mapq.png



Insert Size Plot

Insert Size Histogram
K006295_K006299_22_lane_gembs.isize.png



Mapping Lanes Reports

LANE REPORTS
C003JB.Bisulfite-Seq.DNA_Methylation.EGAX00001195941_2
C003JB.Bisulfite-Seq.DNA_Methylation.EGAX00001195935_20