/EXTERNAL BLUEPRINT/mapping_coverage/K006295_K006299_22_lane_gembs
BACK
SAMPLE K006295_K006299_22_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1568550178 |
100% |
140279898626 |
100% |
| Mapped |
1552155156 |
98.95 % |
138624001404 |
98.82 % |
| Passed |
1175501254 |
74.94 % |
100581957302 |
71.70 % |
| NotPassed |
376653902 |
24.01 % |
38042044102 |
27.12 % |
| |
|
|
|
|
| LowMAPQ |
314546352 |
20.05 % |
31769181552 |
22.65 % |
| MateUnmapped |
16395022 |
1.05 % |
1655897222 |
1.18 % |
| Duplicate |
30263674 |
1.93 % |
3056631074 |
2.18 % |
| BadOrientation |
46 |
0.00 % |
4646 |
0.00 % |
| LargeInsertSize |
48894 |
0.00 % |
4938294 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
31794936 |
2.03 % |
3211288536 |
2.29 % |
| Unmapped |
16395022 |
1.05 % |
1655897222 |
1.18 % |
Base Level Counts
| Bases |
# |
% |
| Total |
118718376773 |
100% |
| Passed |
94408331493 |
79.52 % |
| Trimmed |
5012085592 |
4.22 % |
| Clipped |
137177516 |
0.12 % |
| Overlapping |
17999241955 |
15.16 % |
| LowQuality |
1161540217 |
0.98 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |