/EXTERNAL BLUEPRINT/K006329_15_lane_gembs/S00BHQ.Bisulfite-Seq.DNA_Methylation.EGAX00001236264_15

BACK

SAMPLE K006329_15_lane_gembs LANE S00BHQ.Bisulfite-Seq.DNA_Methylation.EGAX00001236264_15

Mapping Stats (Reads)

Concept Total Reads % Pair One Reads % Pair Two Reads %
Sequenced Reads 1108905050 100.00 % 554452525 100.00 % 554452525 100.00 %
General Reads 1072896569 96.75 % 537789016 96.99 % 535107553 96.51 %
Reads in Control sequences 0 0.00 % 0 0.00 % 0 0.00 %
Reads under conversion control 19325769 1.74 % 9674752 1.74 % 9651017 1.74 %
Reads over conversion control 0 0.00 % 0 0.00 % 0 0.00 %
Unmapped reads 16682712 1.50 % 6988757 1.26 % 9693955 1.75 %
Bisulfite_reads C2T 576742940 52.01 % 289147529 52.15 % 287595411 51.87 %
Bisulfite_reads G2A 515479398 46.49 % 258316239 46.59 % 257163159 46.38 %



Uniqueness (Fragments)

Concept Value
Unique Fragments 422827376
Average Unique 76.26 %



Mapping Stats (Bases)

Concept Total Bases % Pair One Bases % Pair Two Bases %
Base Counts Overall A 39442106911 34.87 % 16086357092 28.44 % 23355749819 41.30 %
Base Counts Overall C 16654352608 14.72 % 819874307 1.45 % 15834478301 28.00 %
Base Counts Overall G 16764568996 14.82 % 15959459876 28.22 % 805109120 1.42 %
Base Counts Overall T 39110642146 34.58 % 23130105001 40.90 % 15980537145 28.26 %
Base Counts Overall N 1136644439 1.00 % 558361274 0.99 % 578283165 1.02 %



Bisulfite Conversion Rate

Bisulfite Conversion Type Conversion Rate
Conversion Rate 0.9992627551179333
Over Conversion Rate NA



Correct Pairs

Concept Total Reads
Correct Pairs 522742718



Mapping Quality

Mapping Quality Histogram
S00BHQ.Bisulfite-Seq.DNA_Methylation.EGAX00001236264_15.mapq.png



Read Length

Read Length Reads
101 554452525
101 554452525



Insert Size Plot

Insert Size Histogram
S00BHQ.Bisulfite-Seq.DNA_Methylation.EGAX00001236264_15.isize.png