/EXTERNAL BLUEPRINT/mapping_coverage/K006329_15_lane_gembs
BACK
SAMPLE K006329_15_lane_gembs
Read Level Counts
| Type |
#reads |
% |
#bases |
% |
| Total |
1049506743 |
100% |
90948967761 |
100% |
| Mapped |
1039990924 |
99.09 % |
89987870042 |
98.94 % |
| Passed |
789331485 |
75.21 % |
64671266703 |
71.11 % |
| NotPassed |
250659439 |
23.88 % |
25316603339 |
27.84 % |
| |
|
|
|
|
| LowMAPQ |
207726264 |
19.79 % |
20980352664 |
23.07 % |
| MateUnmapped |
9515819 |
0.91 % |
961097719 |
1.06 % |
| Duplicate |
23475863 |
2.24 % |
2371062163 |
2.61 % |
| BadOrientation |
114 |
0.00 % |
11514 |
0.00 % |
| LargeInsertSize |
32852 |
0.00 % |
3318052 |
0.00 % |
| |
|
|
|
|
| NotCorrectlyAligned |
19424346 |
1.85 % |
1961858946 |
2.16 % |
| Unmapped |
9515819 |
0.91 % |
961097719 |
1.06 % |
Base Level Counts
| Bases |
# |
% |
| Total |
79716729550 |
100% |
| Passed |
60891473454 |
76.38 % |
| Trimmed |
3305015320 |
4.15 % |
| Clipped |
88423463 |
0.11 % |
| Overlapping |
14957039384 |
18.76 % |
| LowQuality |
474777929 |
0.60 % |
Coverage and Quality
| Coverage Distribution |
Quality Distribution |
 |
 |
| GC/Coverage Heatmap |
Non-CpG Read Profile |
 |
 |