/EXTERNAL BLUEPRINT/methylation/K006329_15_lane_gembs

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SAMPLE K006329_15_lane_gembs




CpG counts

Type Total Pass %
RefCpG 26049640 17967428 68.97 %
NonRefCpG 348205 132004 37.91 %

Coverage CpGs




Coverage Reference CpGs Coverage Information Reads Reference CpGs
./IMG//K006329_15_lane_gembs_coverage_refCpG.png ./IMG//K006329_15_lane_gembs_coverage_refCpGInf.png



Coverage Non Reference CpGs Coverage Information Reads Non-Reference CpGs
./IMG//K006329_15_lane_gembs_coverage_nonRefCpG.png ./IMG//K006329_15_lane_gembs_coverage_nonRefCpGinf.png

Quality CpGs




Genotype Quality Phred scaled Reference CpGs Genotype Quality Phred scaled Non-Reference CpGs
./IMG//K006329_15_lane_gembs_quality_refcpg.png ./IMG//K006329_15_lane_gembs_quality_nonRefCpg.png

Methylation CpGs




CpGs Methylation Distribution
./IMG//K006329_15_lane_gembs_methylation_levels.png

CpG Methylation Profile (From Individual Strands)

Type #AllReferenceCpG % #PassedReferenceCpG % #AllNonReferenceCpG % #PassedNonReferenceCpG %
Unmethylated (0-0.3) 5802045 13.38 % 3911530 11.66 % 102239 18.82 % 23325 8.46 %
Intermediate (0.3-0.7) 7178559 16.55 % 4131658 12.32 % 131247 24.16 % 43932 15.93 %
Methylated (0.7-1) 30396165 70.07 % 25502094 76.02 % 309642 57.01 % 208555 75.61 %
Median Methylation 0.850 0.870 0.760 0.870